CDS

Accession Number TCMCG007C34940
gbkey CDS
Protein Id XP_009147841.2
Location join(82808..82880,82961..83454,83880..83951,84026..84103,84188..84673,84675..85113,85255..85385,85481..85631,85634..85698,85787..85978,85980..86363,86442..86651,86735..86839)
Gene LOC103871349
GeneID 103871349
Organism Brassica rapa

Protein

Length 960aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009149593.3
Definition LOW QUALITY PROTEIN: helicase-like transcription factor CHR28 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category KL
Description SNF2 domain-containing protein helicase domain-containing protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K15173        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04918        [VIEW IN KEGG]
map04918        [VIEW IN KEGG]
GOs GO:0000724        [VIEW IN EMBL-EBI]
GO:0000725        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006304        [VIEW IN EMBL-EBI]
GO:0006305        [VIEW IN EMBL-EBI]
GO:0006306        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009292        [VIEW IN EMBL-EBI]
GO:0009294        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044728        [VIEW IN EMBL-EBI]
GO:0044764        [VIEW IN EMBL-EBI]
GO:0045003        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080188        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATTCGGCGATTGAAATCAGTTCAGACAGTGATGTTGAGATACAAGAAACTAGAACCAATCTTCCTCAAGGCTCTACGCTTAGACCTCACTTTGTTAGGGGGGCGTCTTTAAATGCAAATGGTCTCACTAGAATGGGACTTCCACTACCCTCTTCACGCAATGGCTTTGAAGCCAAGCCAGTGACTAATGGGTACATTGGATCTTCTCAACAGGATGTTAAAAGGGTTCTTCCACCTTCTCTTACTCGACCTCCTATGCCGTTGAGGCCTGATATTGTTGGTGCGAGTAATGGCAACGGGAGTCAGTTTCGTGGGGTTTATACTGTTACTCCAGCTGTGTCAGCTCCAGGAAACTTTGGTGGTGGTTATGGTGGGTTCCATGATGGGATGGGCATGGGGCGTGTCATTAATGGGGATAGGTTGTTTCCTCCGTCTGGGGCGCATGGAGCAGGTGCTTCTACCTCGCATTTCAATGGTGGAAGTGATCCGTTGCATAGGAATGGCATGGGTGAGGATAGGAGTTCGGAGAATGACGAGAGGCTCATCTATCAGGCTGCACTTCAGAATCTGAATCAACCCAAGTCCGAGGTCGATTTACCTGACGGTCTTCTTTCAGTTCCTCTTATGAAGCATCAGAAAATTGCATTGGCATGGATGTTTCAGAAGGAAACTAGAAGTGCCCCCTGTCTAGGAGGGATACTAGCTGATGACCAGGGCCTTGGTAAAACAATCTCAACAATTGCTCTTATCCTAAAACAAATGCACGAGGCAAAATCAAAGTCTGAGAATTCAAGCAATCAAGTGGCTGAAGCATTGGATCTGGATGCTGATGATGAATCAGAGAATCCATTTGTGAAACAAGAGTCGAAGGCTATAAGTGTTAATGGCGTGAATGGCAGCTTTGGCATGAAGAAAGGCAAGGATGAAGAAGCGAGTACTTCAACAAGGAAATTTAATGGGAAAAGACCAGCAGCTGGCACTTTAATTGTTTGTCCAGCCAGTGTTGTGCGGCAGTGGGCAAGAGAACTCGATGAGAAGGTTACTGAAGAAGCTAAGCTTTCTGTTCTAATCTACCACGGTGGTAACAGGACCAAAGATCCTACTGAGCTAGCAAAGTATGATGTGGTGATGACAACTTACGCTATCGTCTCAAATGAAGTTCCAAAGAAAGCCCTGAAGGATGACGATGAGAATGATGAAAAATATGCCGATAATCATGGTCTCGCCTCTGGCTTCTCCATGAGTAAGAAACGCAAAGAAGTGTTGGGTGCTCCTAAGAAGAGCAAGAAACGAGGCAAGAAAAACGCTGACGAGTCTGACCCTGACTGTGGTGCTCTAGCAAAGGTTGGGTGGTTAAGAGTTGTACTAGACGAAGCTCAGACGATTAAGAACCATAGAACCCAGGTGGCAAGAGCTTGTTGTGGTCTTCGAGCCAAAAGGAGATGGTGTTTGTCTGGAACACCGATTCAAAACACGATAGATGATTTGTATAGCTATTTCAGGTTTCTGAGGTATGATCCATATGCCGTGTACAAGTCATTCTACAGCACAATTAAGGTTCCAATTTCCAGAAATTCCCAAATTGGTTACAAGAAGCTTCAAGCTATTTTGAAGGCTATCATGCTGCGCCGTACCAAAGGAACGTTGCTTGATGGTCAGCCTATAATTAATCTACCACCGAAGACAATTAATTTGAGCAAGGTAGACTTTTCGGTAGAGGAGCGGTCTTTCTACACGAAGCTTGAATCCGATTCACGTTCTCAGTTCAAGGCATATGCTGATGCAGGAACTTTGAATCAAAACTATGCGAACATTCTTCTCATGCTTTTACGGTTACGTCAAGCCTGTGACCATCCCCAACTTGTTAAAGGATTCAGCTCAGATTCTGTAGGAAAAGAATCAGAAAAAGCTGCTAAAAAACCTCGGGAGGTTTGTGTTAGCTTGCTGAATCGCTTAGAATCATCTCCCATCTGCCGTGCCTGCAACGATCCACCAGAAGCTCCTGTTATTACTTTGTGTGGCCATATATTCTGCTATCAGTGTGTATCAGAATACATCACAGGGGATGAGAACTCGTGCCCTGTATGCAGAGAACAGCTTGCGCATGATGTTGTTTTCTCCAAGTCTACTCTTCGAACCTGTGCCGCTGATGATATTGGTTGTAGTTCTTCCTCACCAGCTAAAGGTCTTAACAAAGCAGCTTTTCAGAATGGCGAGTTCAGCTCGTCAAAAATCAAAACTGTCTTAGATATTCTGCAGTCGCTTTCTAACCAAGGAAGAGGTCCAAACTCAACTCAGAACGGTGGAATGCCTTCTTCCTCGCTGCCATATGACGTCGATGATGACGATGATGTGACCATTATAGAGCAAACGAGTGTGCCTTCAACTCCTCCTTGCAACCAAGCGCCAGTGAAAACGATCATCTTTTCTCAGTGGACTAGTATGCTTGACGTGCTCGAGTTCTCTCTAAATGAAAAGACTATAGAGTTCAGAAGATTAGATGGTACAATGAGTCTAGCTGCTAGAGACAGAGCTGTCAAAGAATTCAGCAACGATCCAGATGTAAAAGTGATGATAATGTCTCTAAAAGCTGGAAACCTTGGGCTGAATATGGTTGCTGCAAGTCATGTCATTCTTCTTGATCTTTGGTGGAATCCCACTACTGAGGATCAAGCTATTGATCGAGCACATCGTATTGGACAAACTCGACCAGTTACTGTTACTCGTATTACGATAACAAATACGGTTGAGGATAGAATTTTGGCTCTCCAGGAAGAGAAAAGAGCAATGGTTGCATCTGCCTTTGGTGAAGACCATGGTGGAGGCTCTGCAACTCGACTAACAGTAGATGATCTCAAATATCTTTTCATGGTGTAG
Protein:  
MDSAIEISSDSDVEIQETRTNLPQGSTLRPHFVRGASLNANGLTRMGLPLPSSRNGFEAKPVTNGYIGSSQQDVKRVLPPSLTRPPMPLRPDIVGASNGNGSQFRGVYTVTPAVSAPGNFGGGYGGFHDGMGMGRVINGDRLFPPSGAHGAGASTSHFNGGSDPLHRNGMGEDRSSENDERLIYQAALQNLNQPKSEVDLPDGLLSVPLMKHQKIALAWMFQKETRSAPCLGGILADDQGLGKTISTIALILKQMHEAKSKSENSSNQVAEALDLDADDESENPFVKQESKAISVNGVNGSFGMKKGKDEEASTSTRKFNGKRPAAGTLIVCPASVVRQWARELDEKVTEEAKLSVLIYHGGNRTKDPTELAKYDVVMTTYAIVSNEVPKKALKDDDENDEKYADNHGLASGFSMSKKRKEVLGAPKKSKKRGKKNADESDPDCGALAKVGWLRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYSTIKVPISRNSQIGYKKLQAILKAIMLRRTKGTLLDGQPIINLPPKTINLSKVDFSVEERSFYTKLESDSRSQFKAYADAGTLNQNYANILLMLLRLRQACDHPQLVKGFSSDSVGKESEKAAKKLXREVCVSLLNRLESSPICRACNDPPEAPVITLCGHIFCYQCVSEYITGDENSCPVCREQLAHDVVFSKSTLRTCAADDIGCSSSSPAKGLNKAAFQNGEFSSSKIKTVLDILQSLSNQGRGPNSTQNGGMPSSSLPYDVDDDDDVTIIEQTSVPSTPPCNQAPVKTIIFSQWTSMLDVLEFSLNEKTIEFRRLDGTMSLAARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITITNTVEDRILALQEEKRAMVASAFGEDHGGGSATRLTVDDLKYLFMV